PanUKBB and gnomAD Diabetes Data

Source: R/sampleDat.R

This is a subset of 500 variants on chromosome 1 from the Pan-UKBB diabetes GWAS with the whole sample (pop), case, and control minor allele frequency (MAF) for those classified in Pan-UKBB as European (EUR). These variants (which are mapped to GRCh37) have been harmonized with gnomAD non-Finnish European (NFE) MAFs.

sampleDat

Format

sampleDat A data frame with 500 rows and 11 columns:

CHR

chromosome number

POS

base-pair position of variant (GRCh37 coordinates)

REF

Reference allele

ALT

Alternate allele

true_maf_case

MAF in EUR cases in Pan-UKBB Diabetes

true_maf_control

MAF in EUR controls in Pan-UKBB Diabetes

true_maf_pop

MAF in whole EUR sample in Pan-UKBB Diabetes

beta

beta from EUR GWAS in Pan-UKBB Diabetes

SE

SE of beta from EUR GWAS in Pan-UKBB Diabetes

OR

OR from EUR GWAS in Pan-UKBB Diabetes

gnomad_maf

MAF in gnomAD NFE